Oct
15

Profile: Tora Smulders-Srinivasan

BY:
Josh

All she needed to know to fall in love with molecular biology, Dr. Tora Smulders-Srinivasan learned at 15 years old, in her tenth grade biology class. While she had been aware of basic hereditary concepts, Tora hadn’t been exposed to DNA, genetics, RNA, translation, or transcription until then. In that classroom, Tora says, she fell in love. “I loved the whole idea of DNA. The fact that there is a molecule that transfers between generations – and that is what sets up the whole organism. It just fascinated me. The whole idea of making RNA and proteins – I loved it, I thought it was the best thing.”

Tora attended Cornell University and majored in biology. Of all the required classes, genetics was her favorite. The more she learned, the more fascinated she became. During her sophomore year of college, Tora enrolled in the required “genetics 101” course and worked on her first Drosophila project. While other students were annoyed that they had to go into the lab at night and work with the Drosophila, Tora looked forward to it and aced the course. Taking advantage of Cornell’s option to specialize within the general biology field, she specialized in genetics and development.

At the advice of one of her professors, Tora applied to Duke University for graduate school. Upon her acceptance, Tora met with her professor’s former PhD student, Dr. Haifan Lin, who was studying germline stem cell division in Drosophila at Duke. She concluded her first year lab rotations at Lin’s lab, and subsequently started her PhD project in that lab.

Dr. Lin was investigating the regulation of stem cells. Germline stem cells in Drosophila divide asymmetrically. When the stem cell divides, one daughter cell remains a stem cell and the other daughter stem cell becomes an egg. Most cells in an organism divide equally so that both cells are identical to the parent cell. Only stem cells have the unique property of dividing asymmetrically. During his Post Doc, Lin had discovered a specific gene called piwi whose normal function was to keep stem cells as stem cells. When mutant, the gene affected the germline stem cells, causing them to stop dividing asymmetrically and go directly into the differentiation stage. When piwi is mutant, the cells no longer remain stem cells, proving that the gene must be essential for stem cell maintenance.

Tora’s PhD project sought to identify which genes, proteins, and cell signaling pathways other than piwi, are involved in keeping a stem cell a stem cell. Tora used the piwi mutant deficiency screen to look at what other components might be interacting with the mutation in the gene. She found some individual genes that normally interact with piwi in a negative manner. When those genes were mutated, the piwi mutation improved in a negative-negative interaction. Her paper ‘Screens for piwi Suppressors in Drosophila Identify Dosage-Dependent Regulators of Germline Stem Cell Division,’ published in Genetics in 2003, discusses the experiment and results of this project.

Another paper based on her work in Lin’s lab, has not yet been published. Tora took one of the stronger suppressors that she found in individual genes and characterized the interaction in greater detail.

After she completed her PhD, Tora moved to the UK with her husband, Tom, who accepted a lecturer position at Newcastle University. Tora and Tom met at Cornell when she was an undergraduate and he was completing his PhD. Following their move to the UK, Tora sought to obtain a post doc position there.

She contacted Dr. Doug Turnbull and Dr. Robert Lightowlers who are involved in mitochondrial research at Newcastle University. Tora’s project involved working with mouse embryonic stem cells in culture, and studying mitochondrial DNA mutations. It was a whole new system, as she had never previously worked with cell cultures. Moreover, this wasn’t just regular cell culture work – it was neuronal differentiation of embryonic stem cells, which takes time to master. Since she was granted a Ruth L. Kirschstein National Research Service Award (NRSA) for Individual Postdoctoral Fellows, Tora had the funding to continue her research for the next three years.

During her time as a post doc, Tora went on maternity leave following the birth of her son. She assertively states that both science and her family are important to her, and recognizes the difficulty in raising a child while developing a career in science. “I have always wanted to be a mother… I think my passion for science is only exceeded by my passion for having a family. As a scientist there is just no good time for it. I guess it’s a choice you have to make… I only wish it was easier to be a woman in science – to have a career in science and have a family – and do both without falling behind in either area.”

While her fellowship ended in February of this year, she was able to continue working on her project until last month, as she was granted a 6 month extension for her work. For now, Tora is focused on completing her post doc paper. She also is planning on launching a Drosophila project combining her expertise from her PhD and post doc. “I worked on Drosophila for my PhD and I love the system. It’s really an open field now for this area.” There are a lot of genetic “tricks” than can be manipulated with Drosophila, something Tora knows a lot about. She’ll be engaged in preliminary lab work on Drosophila, then applying for fellowships at the PI stage. Tora hopes to remain in academia, and is seeking a faculty position.

“I really love research and I love science. I don’t love doing experiments all the time that don’t work. On a day-to-day basis, science can be really difficult – but on a long term basis, it’s what I love to do.”

  • Read Tora’s 2003 Publication: Smulders-Srinivasan TK, & Lin H (2003). Screens for piwi suppressors in Drosophila identify dosage-dependent regulators of germline stem cell division. Genetics, 165 (4), 1971-91 PMID: 14704180

ResearchBlogging.org

Oct
15

Science News: Week of October 11, 2009

BY:
Josh

Our weekly compilation of science news for the week of October 11, 2009.

Arctic land and seas account for up to 25 percent of world’s carbon sink: Ecologists estimate that Arctic lands and oceans are responsible for up to 25 percent of the global net sink of atmospheric carbon dioxide.

Chimpanzees help on request, but not voluntarily: The evolution of altruism has long puzzled researchers and has mainly been explained previously from ultimate perspectives—I will help you now because I expect there to be some long-term benefit to me.

To read the study:

Yamamoto, S., Humle, T., & Tanaka, M. (2009). Chimpanzees Help Each Other upon Request PLoS ONE, 4 (10) DOI: 10.1371/journal.pone.0007416

Hubble captures galaxy smash-up: A recent NASA/ESA Hubble Space Telescope image captures the result of a pair of spiral galaxies smashing together at breakneck speeds.

Kew seed bank has 10% of all plants – and counting: Kew Millennium Seed Bank Partnership has reached its initial target of collecting 10 per cent of the world’s known wild plant species.

Liver cells grown from patients’ skin cells: Scientists at The Medical College of Wisconsin in Milwaukee have successfully produced liver cells from patients’ skin cells opening the possibility of treating a wide range of diseases that affect liver function.

New strategy for mending broken hearts?: By mimicking the way embryonic stem cells develop into heart muscle in a lab, Duke University bioengineers believe they have taken an important first step toward growing a living “heart patch” to repair heart tissue damaged by disease.

Scientists find new flying reptile: Scientists said that the discovery fills in the large evolutionary gap between two different groups of pterosaurs: primitive long-tailed forms and their descendants, advanced short-tailed pterosaurs, some of which reached gigantic size.

Scientists uncover trampled dinosaur bones in Utah: Paleontologists say a vast collection of broken dinosaur bones unearthed in southeast Utah were smashed underfoot by other dinosaurs shortly after they died.

ResearchBlogging.org

Oct
08

The Rise of Video Protocol Sites

BY:
Jonathan Gross

During the time I spent researching with Professor Zach Adam at Hebrew University, I visited Dr. Ralph Bock’s lab at the Max Planck Institute in Germany to learn how to transform plastids (see plastid transformation protocol). It was a relatively new method, and I was eager to learn all that I could. My main concern was that I would miss something and upon my return to Israel, I would be unable to recreate what I had learned. I remember the surprise of my German colleagues when I pulled out my camera, and began to take photos of every step of the procedure. Visiting the Institute was a great learning experience, and when I returned my fellow lab members had a step-by-step photographed protocol depicting how plastids can be transformed.

Today, with the rise of video protocol sites, my method of protocol documentation seems old-fashioned. Sites like BenchFly and JoVE (Journal of Visualized Experiments) offer the possibility to capture how science is being conducted and sharing it with the rest of the scientific community. Aside from sharing knowledge between scientists, Benchfly (free) also offers a glimpse of scientific procedure to those in the non-scientific community. I think its actually pretty cool.

I hope the research community will continue to see more content like this as it promotes and simplifies scientific research. In fact, we are seriously considering embedding video content to BioKM™ as external widgets.

Hats off to the people taking charge in creating and sharing their knowledge and taking the time to record and upload these videos.

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Oct
08

Science News: Week of October 4, 2009

BY:
Josh

Our weekly compilation of science news for the week of October 4, 2009.

Americans, Israeli Win Nobel Chemistry Prize: Americans Venkatraman Ramakrishnan and Thomas Steitz and Israeli Ada Yonath won the 2009 Nobel Prize in chemistry on Wednesday for mapping ribosomes.

Ballerina tyrannosaur unearthed in Mongolia: The largely intact skeleton of Alioramus altai was excavated from 65-million-year-old rocks in the Gobi desert in Mongolia.

To read the study:

Brusatte, S., Carr, T., Erickson, G., Bever, G., & Norell, M. (2009). A long-snouted, multihorned tyrannosaurid from the Late Cretaceous of Mongolia Proceedings of the National Academy of Sciences DOI: 10.1073/pnas.0906911106

Genome sequence published for important biofuels yeast: A strain of yeast that thrives on turning sugar cane into ethanol for biofuel has had its genome completely sequenced by researchers at Duke University Medical Center.

Heart disease: B-vitamin pills have no effect: B-vitamin supplements should not be recommended for prevention of heart disease, say scientists. A Cochrane Systematic Review has shown these supplements do not reduce the risk of developing or dying from the disease.

Largest known planetary ring discovered: A newly discovered planetary ring can run circles around all the others. The gossamer band of dust encircles Saturn and has a measured diameter of about 24 million kilometers, or 200 times the diameter of the planet.

Souped-up stem cells rescue damaged limbs: Already prized as engines of repair, stem cells have now been engineered to contain a gene that enhances their healing properties by summoning extra blood vessels to newly formed tissue.

Study finds how bacteria combat mercury: U.S. scientists say they’ve found how bacteria convert methyl mercury into a less-toxic form, allowing the bacteria to survive in mercury-rich environments.

To read the study:

Parks, J., Guo, H., Momany, C., Liang, L., Miller, S., Summers, A., & Smith, J. (2009). Mechanism of Hg?C Protonolysis in the Organomercurial Lyase MerB Journal of the American Chemical Society, 131 (37), 13278-13285 DOI: 10.1021/ja9016123

Vaccine-like shots fight cocaine addiction: Vaccine-like shots to keep cocaine abusers from getting high also helped them fight their addiction in the first successful rigorous study of this approach to treating illicit drug use.

ResearchBlogging.org

Oct
07

BioKM's Affiliate Program

BY:
Josh

BioKM is seeking graduate students and bloggers to join our affiliate program. Signup at affiliate.biodata.com

The Affiliate Program is open to researchers and bloggers engaged in science.

BioKM is a laboratory management service from BioData.